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ComputingLifeSci

A complete computational biology curriculum — 23 courses covering programming, databases, machine learning, genomics and research infrastructure. Written for biologists, not computer scientists.

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Bioinformatics Web Tools43 chapters

Course Introduction
1.1 BLAST (Basic Local Alignment Search Tool) — All Variants
1.2 BLAT (BLAST-Like Alignment Tool)
1.3 FASTA (the Alignment Tool, Not the File Format)
1.4 EMBOSS (European Molecular Biology Open Software Suite)
2.1 Clustal Omega
2.2 MUSCLE (Multiple Sequence Comparison by Log-Expectation)
2.3 MAFFT (Multiple Alignment using Fast Fourier Transform)
2.4 T-Coffee (Tree-based Consistency Objective Function for Alignment Evaluation)
3.1 MEGA (Molecular Evolutionary Genetics Analysis)
3.2 IQ-TREE
3.3 PhyML
End of Part 1 — Summary
Coming in Part 2
Coming in Part 3

/Bioinformatics Web Tools/Part 1 — Sequence Analysis, Alignment & Phylogeny

Chapter 10 of 433 min read

3.1 MEGA (Molecular Evolutionary Genetics Analysis)

Official URL: https://www.megasoftware.net Installation: MEGA is a desktop application (Windows, macOS, Linux), not a purely web based tool — download the installer directly from the official site (free…

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