Loading chapter

Loading courses

ComputingLifeSci

A complete computational biology curriculum — 23 courses covering programming, databases, machine learning, genomics and research infrastructure. Written for biologists, not computer scientists.

support@computinglifesci.com 8052536359

Programming for Biology

Python for Biologists
R for Biologists
Perl for Biologists
MATLAB for Biologists
SAS for Biologists
BioJava for Biologists

Data & Databases

SQL for Biological Databases
Bioinformatics Databases
Big Data Mining for Biologists

AI & Machine Learning

Machine Learning for Biologists
Artificial Intelligence for Biologists
MLOps for Biologists
AI Tools for the Bioinformatics Lab

Home All courses Roadmaps Videos BINC & GATE notes Career Know where you can work Pricing About Contact us Terms Privacy Refunds & delivery

Loading chapter

Nextflow & Snakemake54 chapters

Overview
Module 34: Building NGS Pipelines — General Principles
Module 35: RNA-seq Pipeline
Module 36: WGS Pipeline (Whole-Genome Sequencing — Alignment & Preprocessing)
Module 37: Variant Calling Pipeline (Germline)
Module 38: CNV Pipeline (Copy Number Variant Calling)
Module 39: Somatic Variant Calling Pipeline
Module 40: Fusion Pipeline (Gene Fusion Detection)
Module 41: Single-Cell Pipeline
Module 42: Multiomics Pipeline
Module 43: Benchmarking
Module 44: Best Practices
Module 45: CI/CD and GitHub Actions
Module 46: Real Datasets
Module 47: Complete Hands-On Capstone Projects
Course Conclusion

/Nextflow & Snakemake/Nextflow & Snakemake for Bioinformatics — Part 3 of 3

Chapter 53 of 545 min read

Module 47: Complete Hands-On Capstone Projects

These are full, portfolio worthy projects. Each specifies a goal, required components (cross referencing every relevant prior module), a suggested dataset, and a grading rubric you can self assess against. Treat each as…

Sign in to read this

“Module 47: Complete Hands-On Capstone Projects” is for subscribers. Start with a free account — it takes a name and an email — then subscribe for $1 a month to open it.

Python and R courses free in full
First two chapters of every other course

Everything else — including this one — for $1 a month

Cancel any time

Create a free account I already have one

PreviousModule 46: Real Datasets NextCourse Conclusion