Chapter 15 of 303 min read
13. Core Variant Callers: GATK, DeepVariant, Sentieon, FreeBayes, Strelka
This module introduces the major general purpose SNV/indel callers at a conceptual level before Modules 14–15 walk through their specific germline/somatic pipeline applications. 13.1 GATK (Genome Analysis Toolkit)…
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