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ComputingLifeSci

A complete computational biology curriculum — 23 courses covering programming, databases, machine learning, genomics and research infrastructure. Written for biologists, not computer scientists.

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Nextflow & Snakemake54 chapters

Overview
Module 19: AWS Batch
Module 20: Google Life Sciences (and Google Batch)
Module 21: Kubernetes
Module 22: Tower / Seqera Platform
Module 23: Snakemake — Introduction and Philosophy
Module 24: Snakemake Rules
Module 25: Wildcards
Module 26: Resources (Snakemake)
Module 27: Cluster Execution — Concepts Shared by Nextflow and Snakemake
Module 28: SLURM
Module 29: PBS
Module 30: LSF
Module 31: CWL — Common Workflow Language
Module 32: WDL — Workflow Description Language
Module 33: nf-core
Part 2 Summary and What's Next

/Nextflow & Snakemake/Nextflow & Snakemake for Bioinformatics — Part 2 of 3

Chapter 24 of 544 min read

Module 20: Google Life Sciences (and Google Batch)

20.1 Context: A Note on Deprecation The Google Cloud Life Sciences API was Google's original managed genomics job execution service and was Nextflow's primary GCP executor for several years. Google announced deprecation…

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