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Part 2 Summary and What's Next — Nextflow & Snakemake · ComputingLifeSci

Nextflow & Snakemake54 chapters

Overview
Module 19: AWS Batch
Module 20: Google Life Sciences (and Google Batch)
Module 21: Kubernetes
Module 22: Tower / Seqera Platform
Module 23: Snakemake — Introduction and Philosophy
Module 24: Snakemake Rules
Module 25: Wildcards
Module 26: Resources (Snakemake)
Module 27: Cluster Execution — Concepts Shared by Nextflow and Snakemake
Module 28: SLURM
Module 29: PBS
Module 30: LSF
Module 31: CWL — Common Workflow Language
Module 32: WDL — Workflow Description Language
Module 33: nf-core
Part 2 Summary and What's Next

/Nextflow & Snakemake/Nextflow & Snakemake for Bioinformatics — Part 2 of 3

Chapter 38 of 541 min read

Part 2 Summary and What's Next

You can now take a Nextflow pipeline from local execution to any major cloud (AWS Batch, Google Batch) or cluster environment (Kubernetes, SLURM, PBS, LSF) purely through configuration, monitor and orchestrate runs…

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